Category Archives: Science

Introducing pufferfish An efficient index for the colored, compacted, de Bruijn graph

Note: This post describes some cool data structure work (link to the work-in-progress GitHub repo here) my students @fataltes, @hrksrkr, and I have been doing (pre-print coming soon!).  If you find these ideas interesting, or you have any interesting thoughts … Continue reading

Posted in Computational Biology, Science | 4 Comments

Please feed the bears Using Salmon, Sailfish and Sleuth for differential expression